![]() In a joint initiative, the Wellcome Sanger Institute, the Human Cell Atlas, and the CZI distribute datasets related to COVID-19 via anndata’s h5ad files:. Genome Biology: Celebrating 20 Years of Genome Biology selected the initial Scanpy paper for the year 2018 among 20 papers for 20 years. Scanpy selected among 20 papers for 20 years of Genome Biology ![]() Scanpy’s counterpart for RNA velocity, scVelo, made it on the cover of Nature Biotechnology. News scVelo on the cover of Nature Biotechnology Philipp Angerer: developer, software quality, initial anndata conception ☀Īlex Wolf: lead developer 2016-2019, initial anndata & scanpy conceptionįabian Theis & lab: enabling guidance, support and environmentĭiscuss usage on Discourse and development on GitHub.įind tools that harmonize well with anndata & Scanpy via theĬonsider citing Genome Biology (2018) along with original references. Malte Luecken: developer, community & forum Sergei Rybakov: developer, diverse contributions ☀ Gökcen Eraslan: developer, diverse contributions ☀ Isaac Virshup: lead developer since 2019 ☀ The Python-based implementation efficiently deals withĪnndata graph | scanpy graph | ☀ = maintainer Preprocessing, visualization, clustering, trajectory inference and differentialĮxpression testing. Scanpy is a scalable toolkit for analyzing single-cell gene expression data Scanpy – Single-Cell Analysis in Python
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